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    LOC4327118 embryo-specific protein ATS3A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327118, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327118
    Gene description
    embryo-specific protein ATS3A
    Locus tag
    OSNPB_010172800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327118 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3744735..3745570)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3735835..3736805)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene phospholipase D alpha 1-like Neighboring gene peroxidase 25 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene polygalacturonase QRT2 Neighboring gene DCC family protein At1g52590, chloroplastic Neighboring gene uncharacterized protein At2g34160

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    embryo-specific protein ATS3A
    Names
    OSJNBa0089K24.2
    Os01g0172800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3744735..3745570
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791174.3 → XP_015646660.1  embryo-specific protein ATS3A

      UniProtKB/TrEMBL
      A0A0N7KCF1, A2WL80, A2ZPS9, Q94E65
      Conserved Domains (1) summary
      pfam06232
      Location:48 → 181
      ATS3; Embryo-specific protein 3, (ATS3)
    Nucleotide Protein
    Heading Accession and Version

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