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    LOC4334647 SPX domain-containing protein 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334647, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4334647
    Gene description
    SPX domain-containing protein 4-like
    Locus tag
    OSNPB_030827500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SPX4; OsSPX4; OsJ_13205
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    Genomic context

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    See LOC4334647 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (35728708..35731692)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34756005..34758995)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4334643 Neighboring gene uncharacterized LOC4334644 Neighboring gene transmembrane protein 184A Neighboring gene DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cellular response to phosphate starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sPX domain-containing protein 4
    Names
    LOC_Os03g61200
    OSJNBa0010E04.24
    Protein SPX DOMAIN GENE 4
    SPX domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418973.1 → NP_001405902.1  sPX domain-containing protein 4

      Status: VALIDATED

      Source sequence(s)
      AK066364, CB664465, CB664466, CF326842
      UniProtKB/Swiss-Prot
      A0A0P0W5I5, A2XNL6, A3APA3, Q0DM53, Q10B78, Q10B79, Q8SAX5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      35728708..35731692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10B79.1 GenPept UniProtKB/Swiss-Prot:Q10B79

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