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    LOC4337619 protein-tyrosine-phosphatase MKP1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337619, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337619
    Gene description
    protein-tyrosine-phosphatase MKP1
    Locus tag
    OSNPB_050115800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsMKP1
    Expression
    Broad expression in roots after flowering (RPKM 64.4), leaves after flowering (RPKM 43.5) and 6 other tissues See more
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    Genomic context

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    See LOC4337619 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (870745..875118, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (858395..862791, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337617 Neighboring gene UDP-galactose/UDP-glucose transporter 5 Neighboring gene beta-hexosaminidase 1 Neighboring gene cocosin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice. Katou S, et al. Plant Cell Physiol, 2007 Feb. PMID 17218330
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein-tyrosine-phosphatase MKP1
    Names
    MAP kinase phosphatase
    Os05g0115800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      870745..875118 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784225.3 → XP_015639711.1  protein-tyrosine-phosphatase MKP1 isoform X2

      UniProtKB/TrEMBL
      A2V7M8
      Conserved Domains (2) summary
      cd00127
      Location:144 → 281
      DSPc; Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or ...
      cl15697
      Location:318 → 387
      ADF_gelsolin; Actin depolymerization factor/cofilin- and gelsolin-like domains

    2. XM_015784224.3 → XP_015639710.1  protein-tyrosine-phosphatase MKP1 isoform X1

      UniProtKB/TrEMBL
      A2V7M8
      Conserved Domains (2) summary
      cd14498
      Location:145 → 279
      DSP; dual-specificity phosphatase domain
      cl15697
      Location:318 → 387
      ADF_gelsolin; Actin depolymerization factor/cofilin- and gelsolin-like domains
    Nucleotide Protein
    Heading Accession and Version

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