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    LOC4342519 folate-biopterin transporter 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342519, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342519
    Gene description
    folate-biopterin transporter 1, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 14.1), flower buds (RPKM 10.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (3894373..3900526)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3834179..3840300)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g03800 Neighboring gene uncharacterized LOC107278554 Neighboring gene uncharacterized LOC4342521 Neighboring gene FRIGIDA-like protein 4a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    folate-biopterin transporter 1, chloroplastic
    Names
    Os07g0172900
    P0496D04.34-1
    putative integral membrane protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      3894373..3900526
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792000.3 → XP_015647486.1  folate-biopterin transporter 1, chloroplastic

      UniProtKB/TrEMBL
      B8B7N4, B9FVR4
      Conserved Domains (2) summary
      pfam03092
      Location:104 → 493
      BT1; BT1 family
      cl21472
      Location:68 → 493
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    Nucleotide Protein
    Heading Accession and Version

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