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    LOC4344819 histone-lysine N-methyltransferase ATXR3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344819, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344819
    Gene description
    histone-lysine N-methyltransferase ATXR3
    Locus tag
    OSNPB_080180100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4344819 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (4734897..4746350)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (4685136..4696657)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U3 Neighboring gene mRNA cap guanine-N7 methyltransferase 1-like Neighboring gene helicase-like transcription factor CHR28 Neighboring gene increased rDNA silencing protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase ATXR3
    Names
    Os08g0180100
    P0455A11.13
    SET domain-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      4734897..4746350
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794437.3 → XP_015649923.1  histone-lysine N-methyltransferase ATXR3

      UniProtKB/TrEMBL
      B9FZD5
      Conserved Domains (6) summary
      PHA03309
      Location:60 → 369
      PHA03309; transcriptional regulator ICP4; Provisional
      cd09293
      Location:1161 → 1215
      AMN1; Antagonist of mitotic exit network protein 1
      TIGR01642
      Location:269 → 360
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      sd00034
      Location:1134 → 1162
      LRR_AMN1; leucine-rich repeat [structural motif]
      cd10531
      Location:1702 → 1857
      SET_SETD2-like; SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2), ASH1-like protein (ASH1L) and similar proteins
      pfam14237
      Location:893 → 937
      DUF4339; Domain of unknown function (DUF4339)
    Nucleotide Protein
    Heading Accession and Version

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