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    LOC4327146 mini-chromosome maintenance complex-binding protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327146, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327146
    Gene description
    mini-chromosome maintenance complex-binding protein
    Locus tag
    OSNPB_010166800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0028E10.3
    Expression
    Broad expression in flower buds (RPKM 5.5), leaves before flowering (RPKM 5.1) and 6 other tissues See more
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    Genomic context

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    See LOC4327146 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3434564..3438340, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3425785..3431146, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene uncharacterized LOC4327145 Neighboring gene receptor like protein 22 Neighboring gene protein synthesis inhibitor II

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mini-chromosome maintenance complex-binding protein
    Names
    Os01g0166800
    P0701D05.25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3434564..3438340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765184.3 → XP_015620670.1  mini-chromosome maintenance complex-binding protein

      UniProtKB/TrEMBL
      A0A0P0UYF5, A2ZPN4, Q5VQH6
      Conserved Domains (1) summary
      pfam09739
      Location:47 → 593
      MCM_bind; Mini-chromosome maintenance replisome factor
    Nucleotide Protein
    Heading Accession and Version

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