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    LOC4325641 phytochrome-associated serine/threonine-protein phosphatase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325641, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325641
    Gene description
    phytochrome-associated serine/threonine-protein phosphatase
    Locus tag
    OSNPB_010691700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 41.4), roots after flowering (RPKM 41.0) and 6 other tissues See more
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    Genomic context

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    See LOC4325641 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29143905..29148480)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28555940..28560513)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325639 Neighboring gene general transcription and DNA repair factor IIH helicase/translocase subunit XPB1 Neighboring gene uncharacterized LOC136355006 Neighboring gene probable glutathione S-transferase GSTU6 Neighboring gene probable glutathione S-transferase GSTU6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A PP6-type phosphatase holoenzyme directly regulates PIN phosphorylation and auxin efflux in Arabidopsis. Dai M, et al. Plant Cell, 2012 Jun. PMID 22715043, Free PMC Article
    2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phytochrome-associated serine/threonine-protein phosphatase
    Names
    Os01g0691700
    P0034C09.18
    putative phosphoprotein phosphatase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29143905..29148480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767031.3 → XP_015622517.1  phytochrome-associated serine/threonine-protein phosphatase

      UniProtKB/TrEMBL
      A0A0P0V6S6, B8A802, Q0JK77, Q8RZZ3
      Conserved Domains (1) summary
      cd07415
      Location:2 → 285
      MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain
    Nucleotide Protein
    Heading Accession and Version

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