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    LOC4331095 ABC transporter I family member 19 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331095, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331095
    Gene description
    ABC transporter I family member 19
    Locus tag
    OSNPB_020810300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1116_E04.3
    Expression
    Ubiquitous expression in flowers (RPKM 26.1), flower buds (RPKM 24.4) and 6 other tissues See more
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    Genomic context

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    See LOC4331095 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35134475..35137475)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34637863..34640994)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276732 Neighboring gene kinesin-like protein KIN-10A Neighboring gene uncharacterized LOC136355484 Neighboring gene casein kinase 1-like protein 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter I family member 19
    Names
    Os02g0810300
    putative ATP-dependent transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35134475..35137475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769800.3 → XP_015625286.1  ABC transporter I family member 19

      UniProtKB/TrEMBL
      A0A0P0VR21, A2XAU9, A3ACJ0, Q6K989
      Conserved Domains (2) summary
      PRK10790
      Location:4 → 62
      PRK10790; SmdB family multidrug efflux ABC transporter permease/ATP-binding protein
      COG4586
      Location:34 → 227
      COG4586; ABC-type uncharacterized transport system, ATPase component [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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