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    LOC4347439 ETHYLENE INSENSITIVE 3-like 3 protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347439, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347439
    Gene description
    ETHYLENE INSENSITIVE 3-like 3 protein
    Locus tag
    OSNPB_090490200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347439 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23285394..23288064, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18880071..18886380, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene transcription factor TGA2 Neighboring gene uncharacterized LOC136351819 Neighboring gene uncharacterized LOC136351821 Neighboring gene beta-glucosidase 29-like Neighboring gene uncharacterized LOC107278922

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs. Norton GJ, et al. Genomics, 2008 Nov. PMID 18755262
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ETHYLENE INSENSITIVE 3-like 3 protein
    Names
    Os09g0490200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      23285394..23288064 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756608.3 → XP_015612094.1  ETHYLENE INSENSITIVE 3-like 3 protein

      UniProtKB/TrEMBL
      A0A0P0XNH8, A0A8J8XBG4, A2Z2L0, A3C052
      Conserved Domains (1) summary
      PLN03109
      Location:1 → 611
      PLN03109; ETHYLENE-INSENSITIVE3-like3 protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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