LOC4327253 calmodulin-binding transcription activator 4 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4327253
Gene description: calmodulin-binding transcription activator 4
Locus tag: OSNPB_010923600
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in roots after flowering (RPKM 21.0), leaves after flowering (RPKM 20.9) and 6 other tissues See more
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Genomic context

Location:: chromosome: 1

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	1	NC_089035.1 (41039967..41045902)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (40397301..40403252)

Chromosome 1 - NC_089035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables double-stranded DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables transcription coregulator activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: calmodulin-binding transcription activator 4

Names: B1455F06.32-1; B1455F06.32-2; Os01g0923600; P0592G05.16-1; P0592G05.16-2; ethylene-induced calmodulin-binding protein 4-like; putative ethylene-induced calmodulin-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001424578.1 → NP_001411507.1 calmodulin-binding transcription activator 4 isoform 1

Status: VALIDATED

Source sequence(s)

AK068932, AK122110

UniProtKB/TrEMBL

A0A0P0VCE4, A0A8J8XE50, Q5JJP3, Q5JJQ1
NM_001424579.1 → NP_001411508.1 calmodulin-binding transcription activator 4 isoform 2

Status: VALIDATED

Source sequence(s)

AK068932, AK122110, CI000031