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    LOC4345304 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345304, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4345304
    Gene description
    pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
    Locus tag
    OSNPB_080335000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345304 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (15057837..15068687, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14981406..14992332, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351510 Neighboring gene probable fucosyltransferase 8 Neighboring gene LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 Neighboring gene uncharacterized LOC136351385 Neighboring gene cytochrome b561 and DOMON domain-containing protein At5g47530

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
    Names
    OSJNBb0076O03.29
    Os08g0335000
    RNA helicase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      15057837..15068687 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794949.3 → XP_015650435.1  pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X2

      UniProtKB/TrEMBL
      B8B9U1, B9G0E3
      Conserved Domains (5) summary
      smart00490
      Location:649 → 741
      HELICc; helicase superfamily c-terminal domain
      smart00487
      Location:409 → 594
      DEXDc; DEAD-like helicases superfamily
      smart00847
      Location:809 → 894
      HA2; Helicase associated domain (HA2) Add an annotation
      cd00046
      Location:428 → 566
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam07717
      Location:918 → 1028
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

    2. XM_066303442.1 → XP_066159539.1  pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1

      UniProtKB/TrEMBL
      B8B9U1, B9G0E3
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials