U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4343462 aspartic proteinase nepenthesin-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343462, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4343462
    Gene description
    aspartic proteinase nepenthesin-1
    Locus tag
    OSNPB_070533800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1131_E05.104
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC4343462 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21159362..21161235, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20931649..20933538, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene aspartic proteinase nepenthesin-1 Neighboring gene uncharacterized LOC107281715 Neighboring gene thylakoid lumenal 15.0 kDa protein 2, chloroplastic Neighboring gene cysteine-rich receptor-like protein kinase 15 Neighboring gene uncharacterized LOC4343465

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    aspartic proteinase nepenthesin-1
    Names
    OSJNBa0039D04.25
    Os07g0533800
    putative nucleoid DNA-binding protein cnd41

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      21159362..21161235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789532.3XP_015645018.1  aspartic proteinase nepenthesin-1

      UniProtKB/TrEMBL
      A0A0P0X6Y4, Q0D5V1, Q69IR4, Q8H5I1
      Conserved Domains (1) summary
      cd05476
      Location:96455
      pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants