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    LOC4349296 short-chain dehydrogenase TIC 32, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349296, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4349296
    Gene description
    short-chain dehydrogenase TIC 32, chloroplastic
    Locus tag
    OSNPB_100548000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 70.8), roots after flowering (RPKM 66.3) and 6 other tissues See more
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    Genomic context

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    See LOC4349296 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22132555..22136073, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21440211..21443701, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene short-chain dehydrogenase TIC 32, chloroplastic-like Neighboring gene uncharacterized LOC136353649 Neighboring gene short-chain dehydrogenase TIC 32, chloroplastic Neighboring gene uncharacterized LOC136353650 Neighboring gene tetratricopeptide repeat protein SKI3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    short-chain dehydrogenase TIC 32, chloroplastic
    Names
    Os10g0548000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22132555..22136073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304745.1 → XP_066160842.1  short-chain dehydrogenase TIC 32, chloroplastic isoform X2

    2. XM_066304740.1 → XP_066160837.1  short-chain dehydrogenase TIC 32, chloroplastic isoform X1

      UniProtKB/TrEMBL
      Q0IVX8, Q7XCH3, Q94LU0

    3. XM_066304741.1 → XP_066160838.1  short-chain dehydrogenase TIC 32, chloroplastic isoform X1

      UniProtKB/TrEMBL
      Q0IVX8, Q7XCH3, Q94LU0

    4. XM_066304739.1 → XP_066160836.1  short-chain dehydrogenase TIC 32, chloroplastic isoform X1

      UniProtKB/TrEMBL
      Q0IVX8, Q7XCH3, Q94LU0

    5. XM_066304743.1 → XP_066160840.1  short-chain dehydrogenase TIC 32, chloroplastic isoform X1

      UniProtKB/TrEMBL
      Q0IVX8, Q7XCH3, Q94LU0

    6. XM_066304744.1 → XP_066160841.1  short-chain dehydrogenase TIC 32, chloroplastic isoform X2

    7. XM_015759191.3 → XP_015614677.1  short-chain dehydrogenase TIC 32, chloroplastic isoform X1

      UniProtKB/TrEMBL
      Q0IVX8, Q7XCH3, Q94LU0
      Conserved Domains (1) summary
      cd05327
      Location:34 → 307
      retinol-DH_like_SDR_c_like; retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

    8. XM_066304746.1 → XP_066160843.1  short-chain dehydrogenase TIC 32, chloroplastic isoform X2

    9. XM_015759193.3 → XP_015614679.1  short-chain dehydrogenase TIC 32, chloroplastic isoform X1

      UniProtKB/TrEMBL
      Q0IVX8, Q7XCH3, Q94LU0
      Conserved Domains (1) summary
      cd05327
      Location:34 → 307
      retinol-DH_like_SDR_c_like; retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

    10. XM_066304742.1 → XP_066160839.1  short-chain dehydrogenase TIC 32, chloroplastic isoform X1

      UniProtKB/TrEMBL
      Q0IVX8, Q7XCH3, Q94LU0
    Nucleotide Protein
    Heading Accession and Version

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