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    LOC4347940 G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347940, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347940
    Gene description
    G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300
    Locus tag
    OSNPB_100101000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347940 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (99779..102502)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (94934..97630)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene probable pyridoxal 5'-phosphate synthase subunit PDX1.2 Neighboring gene uncharacterized LOC107279128 Neighboring gene serine carboxypeptidase-like 15 Neighboring gene serine carboxypeptidase-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300
    Names
    Os10g0101000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      99779..102502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759224.3 → XP_015614710.1  G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300

      UniProtKB/TrEMBL
      A0A0P0XRR0, A0A5S6RDP3, Q7G6W1, Q7XHH5, Q8W3C9
      Conserved Domains (3) summary
      smart00220
      Location:502 → 710
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd01098
      Location:309 → 402
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cl21453
      Location:507 → 795
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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