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    LOC4352454 expansin-A26-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352454, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352454
    Gene description
    expansin-A26-like
    Locus tag
    OSNPB_120546800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    EXP26; EXPA26; OsEXP26; OsEXPA26
    Expression
    Biased expression in flowers (RPKM 20.1) and flower buds (RPKM 13.4) See more
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    Genomic context

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    See LOC4352454 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (22776829..22779259)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22088982..22091895)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269585 Neighboring gene uncharacterized LOC107279811 Neighboring gene kinesin-like protein KIN-14Q Neighboring gene calmodulin-binding protein 60 C Neighboring gene condensin-2 complex subunit CAP-D3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Expression of alpha-expansin and expansin-like genes in deepwater rice. Lee Y, et al. Plant Physiol, 2002 Nov. PMID 12428004, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    expansin-A26
    Names
    Alpha-expansin-26
    LOC_Os12g36040
    OsaEXPa1.29
    alpha expansin 26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423559.1 → NP_001410488.1  expansin-A26 precursor

      Status: VALIDATED

      Source sequence(s)
      AK071328, CI347023, CI354985
      UniProtKB/Swiss-Prot
      B7EJ87, Q2QP13, Q8H276, Q946H6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      22776829..22779259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QP13.1 GenPept UniProtKB/Swiss-Prot:Q2QP13

    Gene LinkOut

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