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    LOC4350979 desmethyl-deoxy-podophyllotoxin synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350979, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350979
    Gene description
    desmethyl-deoxy-podophyllotoxin synthase
    Locus tag
    OSNPB_110635500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350979 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (26993145..26995081)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (25040858..25043001)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4350978 Neighboring gene desmethyl-deoxy-podophyllotoxin synthase Neighboring gene uncharacterized LOC107279299 Neighboring gene uncharacterized LOC107279455

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    desmethyl-deoxy-podophyllotoxin synthase
    Names
    Os11g0635500
    cytochrome P450 71D10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      26993145..26995081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760069.2 → XP_015615555.1  desmethyl-deoxy-podophyllotoxin synthase

      UniProtKB/TrEMBL
      Q0IRH4, Q2R0R2, Q2R0R5
      Conserved Domains (1) summary
      cd11072
      Location:73 → 498
      CYP71-like; cytochrome P450 family 71 and similar cytochrome P450s
    Nucleotide Protein
    Heading Accession and Version

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