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    LOC4325649 lipid phosphate phosphatase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325649, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325649
    Gene description
    lipid phosphate phosphatase 2
    Locus tag
    OSNPB_010693300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots after flowering (RPKM 43.4), leaves after flowering (RPKM 42.4) and 2 other tissues See more
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    Genomic context

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    See LOC4325649 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29193212..29195678)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28604998..28607655)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269271 Neighboring gene uncharacterized LOC107275900 Neighboring gene AP2/ERF and B3 domain-containing protein Os01g0693400-like Neighboring gene threonine synthase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipid phosphate phosphatase 2
    Names
    Os01g0693300
    P0034C09.38
    phosphatidic acid phosphatase beta-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29193212..29195678
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765958.3 → XP_015621444.1  lipid phosphate phosphatase 2

      UniProtKB/TrEMBL
      A0A0P0V6W7, A0A9K3Y7W6, A2WU10, A2ZWT0, Q0JK69, Q5N7Q9
      Conserved Domains (1) summary
      PLN02250
      Location:8 → 265
      PLN02250; lipid phosphate phosphatase

    2. XM_015765968.3 → XP_015621454.1  lipid phosphate phosphatase 2

      UniProtKB/TrEMBL
      A0A0P0V6W7, A0A9K3Y7W6, A2WU10, A2ZWT0, Q0JK69, Q5N7Q9
      Conserved Domains (1) summary
      PLN02250
      Location:8 → 265
      PLN02250; lipid phosphate phosphatase
    Nucleotide Protein
    Heading Accession and Version

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