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    LOC4346276 protein indeterminate-domain 6, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346276, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4346276
    Gene description
    protein indeterminate-domain 6, chloroplastic
    Locus tag
    OSNPB_080554400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1125_C01.21
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    Genomic context

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    See LOC4346276 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27880390..27886901, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27733188..27739824, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346274 Neighboring gene uncharacterized LOC4346275 Neighboring gene transmembrane 9 superfamily member 8 Neighboring gene transmembrane 9 superfamily member 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein indeterminate-domain 6, chloroplastic
    Names
    OSJNBb0011H15.47
    Os08g0554400
    putative zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27880390..27886901 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303353.1 → XP_066159450.1  protein indeterminate-domain 6, chloroplastic isoform X1

    2. XM_066303354.1 → XP_066159451.1  protein indeterminate-domain 6, chloroplastic isoform X1

    3. XM_066303356.1 → XP_066159453.1  protein indeterminate-domain 6, chloroplastic isoform X1

    4. XM_066303355.1 → XP_066159452.1  protein indeterminate-domain 6, chloroplastic isoform X1

    5. XM_015794547.3 → XP_015650033.1  protein indeterminate-domain 6, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A0P0XIH2, A2YXZ3, Q6Z3F1
      Conserved Domains (1) summary
      sd00017
      Location:72 → 92
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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