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    LOC4343721 geranylgeranyl pyrophosphate synthase 7, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343721, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343721
    Gene description
    geranylgeranyl pyrophosphate synthase 7, chloroplastic
    Locus tag
    OSNPB_070580900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1301_C12.3
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    Genomic context

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    See LOC4343721 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23736604..23738783, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23506851..23509310, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343720 Neighboring gene uncharacterized LOC107276239 Neighboring gene UDP-rhamnose/UDP-galactose transporter 2 Neighboring gene uncharacterized LOC107281640

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables farnesyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    geranylgeranyl pyrophosphate synthase 7, chloroplastic
    Names
    Os07g0580900
    P0453G03.27
    putative geranylgeranyl diphosphate synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      23736604..23738783 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792501.3 → XP_015647987.1  geranylgeranyl pyrophosphate synthase 7, chloroplastic

      UniProtKB/TrEMBL
      Q0D557, Q7XI92
      Conserved Domains (1) summary
      COG0142
      Location:65 → 366
      IspA; Geranylgeranyl pyrophosphate synthase [Coenzyme transport and metabolism]

    2. XM_015792500.3 → XP_015647986.1  geranylgeranyl pyrophosphate synthase 7, chloroplastic

      UniProtKB/TrEMBL
      Q0D557, Q7XI92
      Conserved Domains (1) summary
      COG0142
      Location:65 → 366
      IspA; Geranylgeranyl pyrophosphate synthase [Coenzyme transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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