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    LOC4334632 uncharacterized LOC4334632 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334632, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334632
    Gene description
    uncharacterized LOC4334632
    Locus tag
    OSNPB_030825500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 34.3), roots after flowering (RPKM 10.2) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (35644463..35647643)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34671281..34674672)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase BSK5 Neighboring gene mitochondrial import inner membrane translocase subunit TIM10 Neighboring gene protein GRAVITROPIC IN THE LIGHT 1 Neighboring gene protein DEFECTIVE IN EXINE FORMATION 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA-templated transcription elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4334632
    Names
    Os03g0825500
    transcription termination/antitermination protein NusG

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      35644463..35647643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772471.3 → XP_015627957.1  uncharacterized protein LOC4334632

      UniProtKB/TrEMBL
      A0A5S6R8B8, A2XNJ4, Q10BA7, Q94GE2
      Conserved Domains (2) summary
      cd09890
      Location:105 → 216
      NGN_plant; Plant N-Utilization Substance G (NusG) N-terminal (NGN) domain
      COG0250
      Location:104 → 329
      NusG; Transcription antitermination factor NusG [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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