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    LOC4327088 enoyl-CoA delta isomerase 2, peroxisomal [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327088, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327088
    Gene description
    enoyl-CoA delta isomerase 2, peroxisomal
    Locus tag
    OSNPB_010205600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327088 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5782867..5783761)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5773259..5774274)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL5 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene shaggy-related protein kinase GSK1-like Neighboring gene peroxidase P7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables delta(3)-delta(2)-enoyl-CoA isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid beta-oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    enoyl-CoA delta isomerase 2, peroxisomal
    Names
    Os01g0205600
    P0451C06.25
    carnitine racemase -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      5782867..5783761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762301.3 → XP_015617787.1  enoyl-CoA delta isomerase 2, peroxisomal

      UniProtKB/TrEMBL
      A0A0P0V033, A0A979HKI2, A2WLV9, Q0JPS4, Q9LEA0
      Conserved Domains (1) summary
      cl23717
      Location:6 → 237
      crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
    Nucleotide Protein
    Heading Accession and Version

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