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    LOC9269513 5'-adenylylsulfate reductase-like 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269513, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9269513
    Gene description
    5'-adenylylsulfate reductase-like 6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    APRL6; OsAPRL6
    Expression
    Broad expression in leaves after flowering (RPKM 65.5), flower buds (RPKM 49.3) and 6 other tissues See more
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    Genomic context

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    See LOC9269513 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (22353000..22356224, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (21666322..21669476, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene respiratory burst oxidase homolog protein B Neighboring gene uncharacterized LOC4352440 Neighboring gene uncharacterized LOC4352441 Neighboring gene uncharacterized LOC136354783 Neighboring gene rapid alkalinization factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    5'-adenylylsulfate reductase-like 6
    Names
    APR-like 6
    Adenosine 5'-phosphosulfate reductase-like 6
    LOC_Os12g35640

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      22353000..22356224 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764435.3 → XP_015619921.1  5'-adenylylsulfate reductase-like 6

      UniProtKB/Swiss-Prot
      Q2QP53
      UniProtKB/TrEMBL
      A3CI56
      Conserved Domains (1) summary
      cl00388
      Location:61 → 160
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QP53.1 GenPept UniProtKB/Swiss-Prot:Q2QP53

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