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    LOC4345494 disease resistance protein RGA5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345494, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4345494
    Gene description
    disease resistance protein RGA5-like
    Locus tag
    OSNPB_080396700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1297_D02.11-1; OJ1297_D02.11-2; OJ1297_D02.11-3
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 2.6), roots after flowering (RPKM 2.6) and 6 other tissues See more
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    Genomic context

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    See LOC4345494 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (19012200..19028146, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (18876439..18892353, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351587 Neighboring gene uncharacterized LOC9268028 Neighboring gene disease resistance protein RGA4 Neighboring gene uncharacterized LOC107281950

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA5-like
    Names
    Os08g0396700
    putative disease-resistant protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      19012200..19028146 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795486.3 → XP_015650972.1  disease resistance protein RGA5-like isoform X1

      UniProtKB/TrEMBL
      B7ESU7, Q6ZGE1
      Conserved Domains (2) summary
      pfam00931
      Location:2 → 134
      NB-ARC; NB-ARC domain
      pfam11593
      Location:934 → 1011
      Med3; Mediator complex subunit 3 fungal

    2. XM_015795487.3 → XP_015650973.1  disease resistance protein RGA5-like isoform X2

      UniProtKB/TrEMBL
      B7ESU7, Q6ZGE1
      Conserved Domains (1) summary
      cl00295
      Location:618 → 655
      ZZ; Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have ...
    Nucleotide Protein
    Heading Accession and Version

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