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    LOC4352926 microtubule-associated protein 70-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352926, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4352926
    Gene description
    microtubule-associated protein 70-1-like
    Locus tag
    OSNPB_120640900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MAP70.1; AtMAP70-1; OsJ_37030
    Expression
    Ubiquitous expression in flowers (RPKM 15.2), flower buds (RPKM 14.3) and 6 other tissues See more
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    Genomic context

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    See LOC4352926 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (28205498..28209930)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (27487080..27491577)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 Neighboring gene uncharacterized LOC4352925 Neighboring gene actin-1-like Neighboring gene sodium/hydrogen exchanger 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    microtubule-associated protein 70-1
    Names
    70 kDa microtubule-associated protein 1
    LOC_Os12g44340
    putative myosin heavy chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423638.1 → NP_001410567.1  microtubule-associated protein 70-1

      Status: VALIDATED

      Source sequence(s)
      AK066694
      UniProtKB/Swiss-Prot
      A0A0P0YCW5, Q2QLI6, Q84VC2
      UniProtKB/TrEMBL
      B8BN81

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      28205498..28209930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QLI6.1 GenPept UniProtKB/Swiss-Prot:Q2QLI6

    Gene LinkOut

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