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    LOC4326948 beta-glucosidase 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326948, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326948
    Gene description
    beta-glucosidase 5-like
    Locus tag
    OSNPB_010930800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BGLU5; Os1bglu5
    Expression
    Broad expression in leaves before flowering (RPKM 77.4), roots after flowering (RPKM 52.2) and 4 other tissues See more
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    Genomic context

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    See LOC4326948 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41486357..41492461)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40842245..40848204)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative ribonuclease H protein At1g65750 Neighboring gene potassium transporter 5 Neighboring gene uncharacterized LOC4326946 Neighboring gene noroxomaritidine/norcraugsodine reductase Neighboring gene noroxomaritidine/norcraugsodine reductase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-glucosidase 5
    Names
    LOC_Os01g70520
    OSJNBa0052O12.35
    P0506E04.13
    putative beta-glucosidase
    NP_001395944.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409015.1 → NP_001395944.1  beta-glucosidase 5 precursor

      Status: VALIDATED

      Source sequence(s)
      AK070499, CI022363, CI349583, CI564586
      UniProtKB/Swiss-Prot
      A0A0P0VCE1, Q0JGC3, Q5JK35

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41486357..41492461
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5JK35.1 GenPept UniProtKB/Swiss-Prot:Q5JK35

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