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    LOC4326889 chorismate mutase 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326889, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4326889
    Gene description
    chorismate mutase 1, chloroplastic
    Locus tag
    OSNPB_010764400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0403C05.8
    Expression
    Broad expression in leaves after flowering (RPKM 84.4), roots after flowering (RPKM 53.8) and 5 other tissues See more
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32776844..32779978, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32171767..32175017, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene inactive protein FON2 SPARE1-like Neighboring gene protein RETARDED ROOT GROWTH, mitochondrial Neighboring gene clp protease adapter protein ClpF, chloroplastic Neighboring gene isopentenyl phosphate kinase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chorismate mutase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in aromatic amino acid family biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in chorismate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    chorismate mutase 1, chloroplastic
    Names
    Os01g0764400
    chorismate mutase 3, chloroplastic
    putative chorismate mutase

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32776844..32779978 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765648.3XP_015621134.1  chorismate mutase 1, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0V8K2, A2WVD6, A2ZY47, Q5JN19
      Conserved Domains (1) summary
      PLN02344
      Location:33313
      PLN02344; chorismate mutase