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    LOC4352298 GTP 3',8-cyclase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352298, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352298
    Gene description
    GTP 3',8-cyclase, mitochondrial
    Locus tag
    OSNPB_120507000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 20.4), leaves after flowering (RPKM 17.6) and 6 other tissues See more
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    Genomic context

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    See LOC4352298 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (19940633..19945223)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (19452063..19456651)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4352296 Neighboring gene ubiquitin-like-conjugating enzyme ATG10 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene eukaryotic translation initiation factor 5A-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTP 3',8'-cyclase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cyclic pyranopterin monophosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Mo-molybdopterin cofactor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GTP 3',8-cyclase, mitochondrial
    Names
    Os12g0507000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      19940633..19945223
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765158.1 → XP_015620644.1  GTP 3',8-cyclase, mitochondrial isoform X1

      Conserved Domains (3) summary
      cd01335
      Location:187 → 364
      Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
      PLN02951
      Location:107 → 498
      PLN02951; Molybderin biosynthesis protein CNX2
      pfam06463
      Location:354 → 480
      Mob_synth_C; Molybdenum Cofactor Synthesis C

    2. XM_015765159.2 → XP_015620645.1  GTP 3',8-cyclase, mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A0P0YAL9, A2ZKW7, Q0IN54, Q2QQ49
      Conserved Domains (1) summary
      PLN02951
      Location:8 → 399
      PLN02951; Molybderin biosynthesis protein CNX2

    RNA

    1. XR_010738430.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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