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    LOC4331237 tricalbin-3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331237, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331237
    Gene description
    tricalbin-3
    Locus tag
    OSNPB_020829200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1124_D06.5
    Expression
    Ubiquitous expression in flower buds (RPKM 25.6), flowers (RPKM 24.0) and 6 other tissues See more
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    Genomic context

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    See LOC4331237 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (36141848..36147463, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35643017..35648666, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937874 Neighboring gene replication protein A 32 kDa subunit A-like Neighboring gene uncharacterized LOC136355391 Neighboring gene uncharacterized LOC4331238

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tricalbin-3
    Names
    C2 domain-containing protein-like
    Os02g0829200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417107.1 → NP_001404036.1  tricalbin-3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AP014958, CB643344, CB644777, CI131859, CI353115
      UniProtKB/TrEMBL
      Q6K9U1

    2. NM_001417108.1 → NP_001404037.1  tricalbin-3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AP014958, CB643344, CB644777, CI131859, CI353115, CI647227
      UniProtKB/TrEMBL
      B7EI07, B8AF78, B9F4N5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      36141848..36147463 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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