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    LOC4341261 berberine bridge enzyme-like Cyn d 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341261, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341261
    Gene description
    berberine bridge enzyme-like Cyn d 4
    Locus tag
    OSNPB_060549900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21690511..21692441, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20832427..20834504, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene berberine bridge enzyme-like Cyn d 4 Neighboring gene uncharacterized LOC9271874 Neighboring gene small nucleolar RNA snoR117 Neighboring gene large ribosomal subunit protein uL5 Neighboring gene uncharacterized LOC4341263

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    berberine bridge enzyme-like Cyn d 4
    Names
    Os06g0549900
    P0659D09.18
    berberine bridge enzyme-like 18
    inactive tetrahydrocannabinolic acid synthase
    putative CPRD2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      21690511..21692441 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786137.3 → XP_015641623.1  berberine bridge enzyme-like Cyn d 4

      UniProtKB/TrEMBL
      A0A0P0WY26, A3BCL3, Q0DBM6, Q5Z952
      Conserved Domains (2) summary
      pfam08031
      Location:462 → 522
      BBE; Berberine and berberine like
      pfam01565
      Location:82 → 218
      FAD_binding_4; FAD binding domain
    Nucleotide Protein
    Heading Accession and Version

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