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    LOC4326912 F-box protein At2g32560 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326912, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4326912
    Gene description
    F-box protein At2g32560
    Locus tag
    OSNPB_010281000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 169.6) and flowers (RPKM 37.2) See more
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    Genomic context

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    See LOC4326912 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (10017076..10020875)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (10003948..10007752)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g80270, mitochondrial Neighboring gene eukaryotic translation initiation factor 6-2 Neighboring gene uncharacterized LOC4326913 Neighboring gene cyclin-B1-3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein At2g32560
    Names
    B1085F09.18
    F-box domain-containing protein
    OSJNBa0036E02.18
    Os01g0281000
    P0003H10.29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      10017076..10020875
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764469.3 → XP_015619955.1  F-box protein At2g32560

      UniProtKB/TrEMBL
      A0A0P0V187, B9EV92, Q0JNK8, Q7F6S3, Q9LG67, Q9SDH0
      Conserved Domains (1) summary
      pfam00646
      Location:95 → 139
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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