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    LOC4325389 CRM-domain containing factor CFM9, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325389, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4325389
    Gene description
    CRM-domain containing factor CFM9, mitochondrial
    Locus tag
    OSNPB_010958400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1294_F06.29-1; OJ1294_F06.29-2; OJ1294_F06.29-3
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    Genomic context

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    See LOC4325389 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42892948..42897447)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42240769..42245281)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cell division protein FtsY homolog, chloroplastic Neighboring gene EP1-like glycoprotein 2 Neighboring gene uncharacterized LOC4325390 Neighboring gene MACPF domain-containing protein At4g24290

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CRM-domain containing factor CFM9, mitochondrial
    Names
    Os01g0958400
    P0401G10.3-1
    P0401G10.3-2
    P0401G10.3-3
    group II intron splicing factor CRS1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42892948..42897447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767001.3 → XP_015622487.1  CRM-domain containing factor CFM9, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A0P0VD26, A0A0P0VD55, B8A9J1, B9EWJ7, Q5JK62, Q5JK64
      Conserved Domains (2) summary
      smart01103
      Location:172 → 256
      CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
      pfam17075
      Location:63 → 189
      RRT14; Regular of rDNA transcription protein 14

    2. XM_066306806.1 → XP_066162903.1  CRM-domain containing factor CFM9, mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A0P0VCZ4, A0A0P0VD55, Q5JK62, Q5JK63

    RNA

    1. XR_001542727.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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