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    LOC4347331 uncharacterized LOC4347331 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347331, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347331
    Gene description
    uncharacterized LOC4347331
    Locus tag
    OSNPB_090469900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1595_D08.14-1
    Expression
    Ubiquitous expression in roots before flowering (RPKM 19.3), leaves before flowering (RPKM 7.6) and 6 other tissues See more
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    Genomic context

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    See LOC4347331 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (22257674..22263341)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17874457..17880203)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene arabinogalactan protein 1-like Neighboring gene isoamylase 3, chloroplastic Neighboring gene dicarboxylate transporter 2.1, chloroplastic Neighboring gene homeobox-leucine zipper protein HOX4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tRNA-guanosine(34) queuine transglycosylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA-guanine transglycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347331
    Names
    Os09g0469900
    P0676H02.32-1
    putative queuine tRNA-ribosyltransferase
    queuine tRNA-ribosyltransferase catalytic subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      22257674..22263341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795832.3 → XP_015651318.1  uncharacterized protein LOC4347331

      UniProtKB/TrEMBL
      A0A0P0XP81, A2Z281, B9G435, Q6K4A3
      Conserved Domains (1) summary
      pfam01702
      Location:13 → 363
      TGT; Queuine tRNA-ribosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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