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    LOC4343922 probable calcium-binding protein CML13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343922, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343922
    Gene description
    probable calcium-binding protein CML13
    Locus tag
    OSNPB_070618800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CML13
    Expression
    Ubiquitous expression in flower buds (RPKM 63.2), flowers (RPKM 57.1) and 6 other tissues See more
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    Genomic context

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    See LOC4343922 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25766627..25768910)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25540438..25542730)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 27 Neighboring gene uncharacterized LOC4343921 Neighboring gene uncharacterized LOC136357457 Neighboring gene uncharacterized LOC136357458

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in centriole replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centriole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable calcium-binding protein CML13
    Names
    Calmodulin-like protein 13
    LOC_Os07g42660
    P0552F09.133
    P0560B08.106
    putative caltractin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422273.1 → NP_001409202.1  probable calcium-binding protein CML13

      Status: VALIDATED

      Source sequence(s)
      CF335150, CI297978, CV726852, CV727641
      UniProtKB/Swiss-Prot
      Q7F0J0
      UniProtKB/TrEMBL
      A0A0N7KNV5, A0A8J8YNV9, B7EN18, B8B8L5, B9FU91

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25766627..25768910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7F0J0.1 GenPept UniProtKB/Swiss-Prot:Q7F0J0

    Gene LinkOut

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