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    LOC4346858 CRM-domain containing factor CFM3, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346858, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4346858
    Gene description
    CRM-domain containing factor CFM3, chloroplastic/mitochondrial
    Locus tag
    OSNPB_090363100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1001_G09.2; OJ1506_A04.16
    Expression
    Broad expression in leaves before flowering (RPKM 21.2), roots after flowering (RPKM 10.7) and 6 other tissues See more
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    Genomic context

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    See LOC4346858 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (16237228..16250767)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (11880503..11885162)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene aminopeptidase M1-D-like Neighboring gene uncharacterized LOC4346857 Neighboring gene uncharacterized LOC107277457 Neighboring gene uncharacterized LOC4346860

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA splicing, via transesterification reactions IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CRM-domain containing factor CFM3, chloroplastic/mitochondrial
    Names
    Os09g0363100
    chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic
    putative CRS1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      16237228..16250767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757149.3 → XP_015612635.1  CRM-domain containing factor CFM3, chloroplastic/mitochondrial

      UniProtKB/TrEMBL
      A2XVM7, A3AVN4, Q0J2B1, Q6K4E4
      Conserved Domains (2) summary
      smart01103
      Location:752 → 838
      CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
      pfam01985
      Location:345 → 424
      CRS1_YhbY; CRS1 / YhbY (CRM) domain

    2. XM_015757150.3 → XP_015612636.1  CRM-domain containing factor CFM3, chloroplastic/mitochondrial

      UniProtKB/TrEMBL
      A2XVM7, A3AVN4, Q0J2B1, Q6K4E4
      Conserved Domains (2) summary
      smart01103
      Location:752 → 838
      CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
      pfam01985
      Location:345 → 424
      CRS1_YhbY; CRS1 / YhbY (CRM) domain

    RNA

    1. XR_010734904.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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