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    LOC4325160 acyl transferase 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325160, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4325160
    Gene description
    acyl transferase 4-like
    Locus tag
    OSNPB_010291500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AT4; PMT; OsAT4; OsPMT; OsJ_01392
    Expression
    Biased expression in roots before flowering (RPKM 106.4), flowers (RPKM 66.0) and 2 other tissues See more
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    Genomic context

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    See LOC4325160 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (10586362..10590423, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (10561332..10565337, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355190 Neighboring gene uncharacterized LOC136355191 Neighboring gene CBL-interacting protein kinase 1-like Neighboring gene uncharacterized LOC112938696

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    acyl transferase 4
    Names
    3'-N-debenzoyltaxol N-benzoyltransferase -like
    Acyl transferase 4
    LOC_Os01g18744
    Os01g0291500
    P0706B05.17
    p-coumaroyl-CoA monolignol transferase
    NP_001403263.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416334.1 → NP_001403263.1  acyl transferase 4

      Status: VALIDATED

      Source sequence(s)
      AK060689, CI023083, CI767372
      UniProtKB/Swiss-Prot
      Q5JNT2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      10586362..10590423 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5JNT2.1 GenPept UniProtKB/Swiss-Prot:Q5JNT2

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