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    LOC4347899 40S ribosomal protein S25-2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347899, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4347899
    Gene description
    40S ribosomal protein S25-2
    Locus tag
    OSNPB_090568800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1003_C09.15
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    Genomic context

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    See LOC4347899 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (27146947..27148358, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22701722..22703192, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene putative germin-like protein 9-2 Neighboring gene germin-like protein 9-3 Neighboring gene uncharacterized protein At2g27730, mitochondrial Neighboring gene 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S25-2
    Names
    Os09g0568800
    putative 40S ribosomal protein 25S

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422952.1 → NP_001409881.1  40S ribosomal protein S25-2

      Status: VALIDATED

      Source sequence(s)
      CI507787, CI697407
      UniProtKB/TrEMBL
      A0A0P0XRU1, A2Z480, Q652P8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      27146947..27148358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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