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    LOC4333540 histone-binding protein MSI1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333540, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4333540
    Gene description
    histone-binding protein MSI1 homolog
    Locus tag
    OSNPB_030640100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MSI1
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    Genomic context

    See LOC4333540 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (25485049..25493060, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (24621276..24629514, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938351 Neighboring gene patatin-like protein 3 Neighboring gene kxDL motif-containing protein 1 Neighboring gene phosphatidylinositol N-acetylglucosaminyltransferase subunit P Neighboring gene kxDL motif-containing protein LO9-177

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    histone-binding protein MSI1 homolog
    Names
    B1394A07.14
    CAF-1 p48 homolog
    CAF-1 subunit MSI1 homolog
    Chromatin assembly factor 1 subunit MSI1 homolog
    LOC_Os03g43890
    WD domain, G-beta repeat domain-containing protein
    WD-40 repeat-containing protein MSI1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418382.1NP_001405311.1  histone-binding protein MSI1 homolog

      Status: VALIDATED

      Source sequence(s)
      AK059114, CI056202, CI405751, CI635415
      UniProtKB/Swiss-Prot
      A0A0P0W0N0, Q10G81, Q6ASS7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      25485049..25493060 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)