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    LOC9266107 probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266107, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9266107
    Gene description
    probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial
    Locus tag
    OSNPB_010857300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9266107 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37666408..37670200, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37039438..37043478, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324752 Neighboring gene RNA polymerase II C-terminal domain phosphatase-like 2 Neighboring gene cis-prenyltransferase 4, chloroplastic Neighboring gene GABA transporter 1 Neighboring gene nucleobase-ascorbate transporter 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid A biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial
    Names
    Os01g0857300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37666408..37670200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765507.3 → XP_015620993.1  probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X3

      Conserved Domains (2) summary
      PRK05749
      Location:33 → 408
      PRK05749; 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
      pfam04413
      Location:48 → 187
      Glycos_transf_N; 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)

    2. XM_066305957.1 → XP_066162054.1  probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X5

    3. XM_015765505.3 → XP_015620991.1  probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X1

      Conserved Domains (2) summary
      PRK05749
      Location:33 → 449
      PRK05749; 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
      pfam04413
      Location:48 → 228
      Glycos_transf_N; 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)

    4. XM_066305956.1 → XP_066162053.1  probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X4

    5. XM_015765506.3 → XP_015620992.1  probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2

      UniProtKB/TrEMBL
      B8ACH0, B9EUS1
      Conserved Domains (1) summary
      PRK05749
      Location:33 → 442
      PRK05749; 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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