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    LOC9267440 uncharacterized LOC9267440 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267440, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9267440
    Gene description
    uncharacterized LOC9267440
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 23.9), leaves before flowering (RPKM 22.3) and 6 other tissues See more
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    Genomic context

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    See LOC9267440 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (17209331..17219884, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (16861941..16872533, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene phospholipid-transporting ATPase 2 Neighboring gene small nucleolar RNA Z247 Neighboring gene uncharacterized LOC107280629 Neighboring gene fatty acyl-CoA reductase 1 Neighboring gene protein FAR1-RELATED SEQUENCE 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC9267440

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      17209331..17219884 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309373.1 → XP_066165470.1  uncharacterized protein LOC9267440 isoform X3

    2. XM_066309372.1 → XP_066165469.1  uncharacterized protein LOC9267440 isoform X3

    3. XM_066309389.1 → XP_066165486.1  uncharacterized protein LOC9267440 isoform X3

    4. XM_066309382.1 → XP_066165479.1  uncharacterized protein LOC9267440 isoform X3

    5. XM_066309359.1 → XP_066165456.1  uncharacterized protein LOC9267440 isoform X1

    6. XM_066309381.1 → XP_066165478.1  uncharacterized protein LOC9267440 isoform X3

    7. XM_066309369.1 → XP_066165466.1  uncharacterized protein LOC9267440 isoform X2

    8. XM_066309364.1 → XP_066165461.1  uncharacterized protein LOC9267440 isoform X2

    9. XM_066309378.1 → XP_066165475.1  uncharacterized protein LOC9267440 isoform X3

    10. XM_066309371.1 → XP_066165468.1  uncharacterized protein LOC9267440 isoform X3

    11. XM_066309376.1 → XP_066165473.1  uncharacterized protein LOC9267440 isoform X3

    12. XM_066309375.1 → XP_066165472.1  uncharacterized protein LOC9267440 isoform X3

    13. XM_015780038.3 → XP_015635524.2  uncharacterized protein LOC9267440 isoform X3

    14. XM_066309362.1 → XP_066165459.1  uncharacterized protein LOC9267440 isoform X2

    15. XM_015780037.3 → XP_015635523.2  uncharacterized protein LOC9267440 isoform X3

    16. XM_066309361.1 → XP_066165458.1  uncharacterized protein LOC9267440 isoform X2

    17. XM_066309377.1 → XP_066165474.1  uncharacterized protein LOC9267440 isoform X3

    18. XM_066309370.1 → XP_066165467.1  uncharacterized protein LOC9267440 isoform X3

    19. XM_066309358.1 → XP_066165455.1  uncharacterized protein LOC9267440 isoform X1

    20. XM_066309388.1 → XP_066165485.1  uncharacterized protein LOC9267440 isoform X3

    21. XM_066309384.1 → XP_066165481.1  uncharacterized protein LOC9267440 isoform X3

    22. XM_066309374.1 → XP_066165471.1  uncharacterized protein LOC9267440 isoform X3

    23. XM_066309379.1 → XP_066165476.1  uncharacterized protein LOC9267440 isoform X3

    24. XM_015780033.3 → XP_015635519.2  uncharacterized protein LOC9267440 isoform X3

    25. XM_066309368.1 → XP_066165465.1  uncharacterized protein LOC9267440 isoform X2

    26. XM_066309367.1 → XP_066165464.1  uncharacterized protein LOC9267440 isoform X2

    27. XM_066309363.1 → XP_066165460.1  uncharacterized protein LOC9267440 isoform X2

    28. XM_066309366.1 → XP_066165463.1  uncharacterized protein LOC9267440 isoform X2

    29. XM_066309365.1 → XP_066165462.1  uncharacterized protein LOC9267440 isoform X2

    30. XM_066309360.1 → XP_066165457.1  uncharacterized protein LOC9267440 isoform X2

    31. XM_066309387.1 → XP_066165484.1  uncharacterized protein LOC9267440 isoform X3

    32. XM_066309380.1 → XP_066165477.1  uncharacterized protein LOC9267440 isoform X3

    33. XM_066309385.1 → XP_066165482.1  uncharacterized protein LOC9267440 isoform X3

    34. XM_066309383.1 → XP_066165480.1  uncharacterized protein LOC9267440 isoform X3

    35. XM_015780035.3 → XP_015635521.2  uncharacterized protein LOC9267440 isoform X3

    36. XM_066309386.1 → XP_066165483.1  uncharacterized protein LOC9267440 isoform X3

    37. XM_015780041.3 → XP_015635527.2  uncharacterized protein LOC9267440 isoform X3

    38. XM_066309357.1 → XP_066165454.1  uncharacterized protein LOC9267440 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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