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    LOC4325788 homeobox protein knotted-1-like 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325788, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325788
    Gene description
    homeobox protein knotted-1-like 1
    Locus tag
    OSNPB_010302500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OSH6; HOS16
    Expression
    Biased expression in roots before flowering (RPKM 6.2), flower buds (RPKM 3.8) and 3 other tissues See more
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    Genomic context

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    See LOC4325788 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (11193324..11200732)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (11166920..11174459)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325787 Neighboring gene uncharacterized LOC9269128 Neighboring gene uncharacterized LOC107280832 Neighboring gene calvin cycle protein CP12-1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein knotted-1-like 1
    Names
    B1146F03.18
    Homeobox protein HOS16
    Homeobox protein OSH6
    LOC_Os01g19694
    P0035H10.13
    knotted1-type homeobox protein OSH6
    putative knotted1-type homeobox protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401492.1 → NP_001388421.1  homeobox protein knotted-1-like 1

      Status: VALIDATED

      Source sequence(s)
      AK241312, AP014957
      UniProtKB/Swiss-Prot
      A0A0P0V1U2, Q9FP29, Q9SXM8, Q9XIV6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      11193324..11200732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FP29.1 GenPept UniProtKB/Swiss-Prot:Q9FP29

    Gene LinkOut

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