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    LOC4340249 AP-1 complex subunit gamma-2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340249, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4340249
    Gene description
    AP-1 complex subunit gamma-2
    Locus tag
    OSNPB_060167100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340249 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3539305..3549197)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3376571..3386389)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene PTI1-like tyrosine-protein kinase At3g15890 Neighboring gene pre-mRNA-processing-splicing factor 8A Neighboring gene RING-H2 finger protein ATL46 Neighboring gene dehydrodolichyl diphosphate synthase CPT3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-1 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-1 complex subunit gamma-2
    Names
    Os06g0167100
    P0680A03.21
    putative gamma-adaptin 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      3539305..3549197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311535.1 → XP_066167632.1  AP-1 complex subunit gamma-2 isoform X1

      UniProtKB/TrEMBL
      B8B389

    2. XM_015788096.2 → XP_015643582.1  AP-1 complex subunit gamma-2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WTB8, B8B389, Q0DE91, Q5WAB3
      Conserved Domains (2) summary
      smart00809
      Location:757 → 867
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam01602
      Location:30 → 584
      Adaptin_N; Adaptin N terminal region

    3. XM_066311536.1 → XP_066167633.1  AP-1 complex subunit gamma-2 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials