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    LOC4338546 UDP-glucuronic acid decarboxylase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338546, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4338546
    Gene description
    UDP-glucuronic acid decarboxylase 2
    Locus tag
    OSNPB_050363200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    UXS-5
    Expression
    Broad expression in roots before flowering (RPKM 216.7), leaves before flowering (RPKM 88.5) and 6 other tissues See more
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    Genomic context

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    See LOC4338546 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (17443605..17447617, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17343461..17347641, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At5g01610 Neighboring gene protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial Neighboring gene caffeoylshikimate esterase Neighboring gene putative E3 ubiquitin-protein ligase LIN-1 Neighboring gene uncharacterized LOC107281133 Neighboring gene mitochondrial zinc maintenance protein 1, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of soluble and putative membrane-bound UDP-glucuronic acid decarboxylase (OsUXS) isoforms in rice. Suzuki K, et al. Arch Biochem Biophys, 2004 Nov 15. PMID 15488465
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD+ binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables UDP-glucuronate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in D-xylose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-glucuronic acid decarboxylase 2
    Names
    Os05g0363200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      17443605..17447617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783812.3 → XP_015639298.1  UDP-glucuronic acid decarboxylase 2 isoform X1

      UniProtKB/TrEMBL
      Q0DIU1, Q60E78, Q6I683
      Conserved Domains (1) summary
      PLN02206
      Location:1 → 442
      PLN02206; UDP-glucuronate decarboxylase

    2. XM_066310333.1 → XP_066166430.1  UDP-glucuronic acid decarboxylase 2 isoform X2

      UniProtKB/TrEMBL
      Q60E78
    Nucleotide Protein
    Heading Accession and Version

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