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    LOC4349299 U-box domain-containing protein 70-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349299, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4349299
    Gene description
    U-box domain-containing protein 70-like
    Locus tag
    OSNPB_100548300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 36.2), roots after flowering (RPKM 32.1) and 6 other tissues See more
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    Genomic context

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    See LOC4349299 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22146347..22152075, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21454016..21459785, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353650 Neighboring gene tetratricopeptide repeat protein SKI3 Neighboring gene mediator of RNA polymerase II transcription subunit 32 Neighboring gene expansin-B9-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 70-like
    Names
    Os10g0548300
    putative protein kinase

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22146347..22152075 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758565.3 → XP_015614051.1  U-box domain-containing protein 70-like isoform X4

      UniProtKB/TrEMBL
      B8BI45
      Conserved Domains (4) summary
      COG1196
      Location:151 → 290
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16655
      Location:578 → 619
      RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger, found in WD repeat, SAM and U-box domain-containing protein 1 (WDSUB1) and similar proteins
      cl00292
      Location:27 → 97
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
      cl21453
      Location:291 → 551
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015758566.2 → XP_015614052.1  U-box domain-containing protein 70-like isoform X5

      UniProtKB/TrEMBL
      A0A5S6RB42, A0A8J8YKX9, B8BI45, B9G6V7, Q0IVX5, Q336U7
      Conserved Domains (4) summary
      COG1196
      Location:139 → 278
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16655
      Location:566 → 607
      RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger, found in WD repeat, SAM and U-box domain-containing protein 1 (WDSUB1) and similar proteins
      cl00292
      Location:2 → 85
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
      cl21453
      Location:279 → 539
      PKc_like; Protein Kinases, catalytic domain

    3. XM_015758569.3 → XP_015614055.1  U-box domain-containing protein 70-like isoform X5

      UniProtKB/TrEMBL
      A0A5S6RB42, A0A8J8YKX9, B8BI45, B9G6V7, Q0IVX5, Q336U7
      Conserved Domains (4) summary
      COG1196
      Location:139 → 278
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16655
      Location:566 → 607
      RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger, found in WD repeat, SAM and U-box domain-containing protein 1 (WDSUB1) and similar proteins
      cl00292
      Location:2 → 85
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
      cl21453
      Location:279 → 539
      PKc_like; Protein Kinases, catalytic domain

    4. XM_015758564.3 → XP_015614050.1  U-box domain-containing protein 70-like isoform X3

      UniProtKB/TrEMBL
      Q94LU3
      Conserved Domains (4) summary
      COG1196
      Location:182 → 321
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16655
      Location:609 → 650
      RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger, found in WD repeat, SAM and U-box domain-containing protein 1 (WDSUB1) and similar proteins
      cl00292
      Location:34 → 128
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
      cl21453
      Location:322 → 582
      PKc_like; Protein Kinases, catalytic domain

    5. XM_015758563.3 → XP_015614049.1  U-box domain-containing protein 70-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0XWV2
      Conserved Domains (4) summary
      COG1196
      Location:196 → 335
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16655
      Location:623 → 664
      RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger, found in WD repeat, SAM and U-box domain-containing protein 1 (WDSUB1) and similar proteins
      cl00292
      Location:14 → 142
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
      cl21453
      Location:336 → 596
      PKc_like; Protein Kinases, catalytic domain

    6. XM_015758562.3 → XP_015614048.1  U-box domain-containing protein 70-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0XWV2
      Conserved Domains (4) summary
      smart00504
      Location:629 → 692
      Ubox; Modified RING finger domain
      smart00220
      Location:343 → 539
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cl00292
      Location:14 → 149
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
      cl21453
      Location:343 → 603
      PKc_like; Protein Kinases, catalytic domain

    7. XM_066304738.1 → XP_066160835.1  U-box domain-containing protein 70-like isoform X6

      UniProtKB/TrEMBL
      A0A0P0XX95

    8. XM_015758568.3 → XP_015614054.1  U-box domain-containing protein 70-like isoform X5

      UniProtKB/TrEMBL
      A0A5S6RB42, A0A8J8YKX9, B8BI45, B9G6V7, Q0IVX5, Q336U7
      Conserved Domains (4) summary
      COG1196
      Location:139 → 278
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16655
      Location:566 → 607
      RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger, found in WD repeat, SAM and U-box domain-containing protein 1 (WDSUB1) and similar proteins
      cl00292
      Location:2 → 85
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
      cl21453
      Location:279 → 539
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
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