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    LOC4349026 protein Rf1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349026, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349026
    Gene description
    protein Rf1, mitochondrial
    Locus tag
    OSNPB_100499500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    rf1b
    Expression
    Biased expression in roots before flowering (RPKM 8.5), leaves before flowering (RPKM 1.0) and 3 other tissues See more
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    Genomic context

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    See LOC4349026 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19749545..19752361)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19056218..19060959)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein RP/EB family member 1C Neighboring gene CBS domain-containing protein CBSX5 Neighboring gene protein NEOXANTHIN-DEFICIENT 1-like Neighboring gene uncharacterized LOC9272656 Neighboring gene uncharacterized LOC4349029

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Rf1, mitochondrial
    Names
    Os10g0499500
    pentatricopeptide repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      19749545..19752361
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759375.3 → XP_015614861.1  protein Rf1, mitochondrial

      UniProtKB/TrEMBL
      A0A0N7KS10, A3C664, Q8LNH0
      Conserved Domains (6) summary
      TIGR00756
      Location:304 → 338
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:235 → 262
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:402 → 435
      PPR_1; PPR repeat
      pfam13041
      Location:406 → 455
      PPR_2; PPR repeat family
      pfam13812
      Location:374 → 406
      PPR_3; Pentatricopeptide repeat domain
      cl03252
      Location:437 → 465
      PPR; PPR repeat

    RNA

    1. XR_001540819.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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