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    LOC4348726 L-type lectin-domain containing receptor kinase SIT2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348726, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4348726
    Gene description
    L-type lectin-domain containing receptor kinase SIT2-like
    Locus tag
    OSNPB_100441900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348726 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (16541591..16544069)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (15873939..15880103)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene ras-related protein RABF1 Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like Neighboring gene uncharacterized LOC4348728 Neighboring gene UDP-glycosyltransferase 86A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane receptor protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to oomycetes IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-type lectin-domain containing receptor kinase SIT2-like
    Names
    L-type lectin-domain containing receptor kinase IV.2
    Os10g0441900
    Os10g0442000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      16541591..16544069
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759455.3 → XP_015614941.3  L-type lectin-domain containing receptor kinase SIT2-like

      UniProtKB/TrEMBL
      A2Z7U1, Q0IXF7, Q337T2
    Nucleotide Protein
    Heading Accession and Version

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