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    LOC4331258 outer envelope pore protein 21, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331258, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331258
    Gene description
    outer envelope pore protein 21, chloroplastic-like
    Locus tag
    OSNPB_020832200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OEP21; OsJ_09004; OJ1149_C12.21
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 30.1), leaves after flowering (RPKM 22.4) and 6 other tissues See more
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    Genomic context

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    See LOC4331258 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (36283682..36286659, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35784799..35787815, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable phospholipase A2 homolog 1 Neighboring gene homoserine kinase Neighboring gene calcium-dependent protein kinase 6-like Neighboring gene RING-H2 finger protein ATL80 Neighboring gene callose synthase 3 Neighboring gene uncharacterized LOC4331261

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables voltage-gated monoatomic anion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of monoatomic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    outer envelope pore protein 21, chloroplastic
    Names
    Chloroplastic outer envelope pore protein of 21 kDa
    LOC_Os02g58550
    putative chloroplast channel forming outer membrane protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423882.1 → NP_001410811.1  outer envelope pore protein 21, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      CF308299, CI421683
      UniProtKB/Swiss-Prot
      A0A0P0VRP2, Q6K965

    2. NM_001423883.1 → NP_001410812.1  outer envelope pore protein 21, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK108268, CF308299, CI421683
      UniProtKB/Swiss-Prot
      A0A0P0VRP2, Q6K965

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      36283682..36286659 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6K965.1 GenPept UniProtKB/Swiss-Prot:Q6K965

    Gene LinkOut

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