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    LOC4338980 PRA1 family protein A1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338980, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338980
    Gene description
    PRA1 family protein A1
    Locus tag
    OSNPB_050455600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338980 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22497570..22501217)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22384139..22387807)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene transcription factor ILR3 Neighboring gene delta-1-pyrroline-5-carboxylate synthase 1-like Neighboring gene uracil phosphoribosyltransferase Neighboring gene uncharacterized LOC4338982

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PRA1 family protein A1
    Names
    Os05g0455600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22497570..22501217
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784843.2 → XP_015640329.1  PRA1 family protein A1

      UniProtKB/TrEMBL
      A0A5S6RBZ4, B7E4Q0, Q0DHN5, Q60EM3
      Conserved Domains (1) summary
      pfam03208
      Location:19 → 192
      PRA1; PRA1 family protein
    Nucleotide Protein
    Heading Accession and Version

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