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    LOC4346138 protein NUCLEAR FUSION DEFECTIVE 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346138, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346138
    Gene description
    protein NUCLEAR FUSION DEFECTIVE 4
    Locus tag
    OSNPB_080532400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 13.3), flowers (RPKM 11.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26684353..26689598)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26537648..26542919)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like Neighboring gene nuclear transport factor 2-like Neighboring gene plant-specific TFIIB-related protein PTF2 Neighboring gene peroxidase 55 Neighboring gene non-specific lipid transfer protein GPI-anchored 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NUCLEAR FUSION DEFECTIVE 4
    Names
    Os08g0532400
    P0702E04.19
    nodulin-related protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26684353..26689598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794607.3 → XP_015650093.1  protein NUCLEAR FUSION DEFECTIVE 4

      UniProtKB/TrEMBL
      A0A0P0XJG9, A2YXF9, Q0J462, Q6YZD9
      Conserved Domains (1) summary
      cd17354
      Location:15 → 572
      MFS_Mch1p_like; Monocarboxylate transporter-homologous (Mch) 1 protein and similar transporters of the Major Facilitator Superfamily of transporters
    Nucleotide Protein
    Heading Accession and Version

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