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    LOC9272389 protein S40-7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272389, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9272389
    Gene description
    protein S40-7
    Locus tag
    OSNPB_040542000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 3.5), flowers (RPKM 2.6) and 6 other tissues See more
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    Genomic context

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    See LOC9272389 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27642102..27649126)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27136895..27144271)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HOX22 Neighboring gene uncharacterized membrane protein At1g16860 Neighboring gene probable metal-nicotianamine transporter YSL9 Neighboring gene uncharacterized LOC136356072

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein S40-7
    Names
    Os04g0542000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27642102..27649126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777948.3 → XP_015633434.1  protein S40-7

      UniProtKB/TrEMBL
      A0A0P0WD51, A2XW09, A2XW11, Q01IJ8, Q7XUJ4
      Conserved Domains (1) summary
      pfam04520
      Location:34 → 208
      Senescence_reg; Senescence regulator

    2. XM_066309508.1 → XP_066165605.1  protein S40-7

      UniProtKB/TrEMBL
      A0A0P0WD51, A2XW09, A2XW11, Q01IJ8, Q7XUJ4

    3. XM_066309510.1 → XP_066165607.1  protein S40-7

      UniProtKB/TrEMBL
      A0A0P0WD51, A2XW09, A2XW11, Q01IJ8, Q7XUJ4

    4. XM_066309509.1 → XP_066165606.1  protein S40-7

      UniProtKB/TrEMBL
      A0A0P0WD51, A2XW09, A2XW11, Q01IJ8, Q7XUJ4
    Nucleotide Protein
    Heading Accession and Version

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