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    LOC4350889 disease resistance protein Pik-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350889, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4350889
    Gene description
    disease resistance protein Pik-2-like
    Locus tag
    OSNPB_110606500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350889 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25357308..25362874)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23408923..23413071)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268214 Neighboring gene small nucleolar RNA U54 Neighboring gene disease resistance protein Pikm1-TS-like Neighboring gene uncharacterized LOC112936835 Neighboring gene disease resistance protein Pikm1-TS-like Neighboring gene disease resistance protein Pik-2-like Neighboring gene pentatricopeptide repeat-containing protein At4g19890 Neighboring gene LRR receptor kinase SERK2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein Pik-2-like
    Names
    Os11g0606500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      25357308..25362874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305746.1 → XP_066161843.1  disease resistance protein Pik-2-like isoform X2

    2. XM_015761808.3 → XP_015617294.1  disease resistance protein Pik-2-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y452, B9FZU5, Q0IRQ1
      Conserved Domains (4) summary
      COG4886
      Location:601 → 698
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:10 → 134
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      pfam00931
      Location:179 → 392
      NB-ARC; NB-ARC domain
      pfam13855
      Location:816 → 866
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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